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@Genentech

Genentech

Dedicated to pursuing groundbreaking science to discover and develop medicines

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  1. gReLU gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Python 365 60

  2. SpatialAgent SpatialAgent Public

    A harness for spatial biology

    Python 219 27

  3. equifold equifold Public

    Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

    Python 131 18

  4. gneprop gneprop Public

    GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.

    Jupyter Notebook 50 6

  5. scallops scallops Public

    SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

    Python 16 4

  6. AssayBench AssayBench Public

    AssayBench: An Assay-Level Virtual Cell Benchmark for LLMs and Agents

    Python 16

Repositories

Showing 10 of 171 repositories
  • scallops Public

    SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

    Genentech/scallops's past year of commit activity
    Python 16 4 2 4 Updated Oct 15, 2026
  • covtracer Public

    Tools for contextualizing tests, built using covr test traces.

    Genentech/covtracer's past year of commit activity
    R 23 4 11 0 Updated Oct 15, 2026
  • CRC-WNT-MAPK-Landscape-Reproduction Public
    Genentech/CRC-WNT-MAPK-Landscape-Reproduction's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 15, 2026
  • oncophenomap Public
    Genentech/oncophenomap's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 15, 2026
  • jmpost Public
    Genentech/jmpost's past year of commit activity
    R 17 4 31 1 Updated Oct 15, 2026
  • ringer Public

    RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion

    Genentech/ringer's past year of commit activity
    Python 24 MIT 3 0 0 Updated Oct 14, 2026
  • CHART Public
    Genentech/CHART's past year of commit activity
    Python 3 MIT 0 0 0 Updated Oct 14, 2026
  • BioReasoningChallenge Public

    MLGenX BioReasoning Challenge 2026

    Genentech/BioReasoningChallenge's past year of commit activity
    Python 16 5 0 0 Updated Oct 10, 2026
  • rdborrow Public

    External Control Borrowing for Rare Disease Simulation and Analysis

    Genentech/rdborrow's past year of commit activity
    R 0 0 13 1 Updated Oct 8, 2026
  • midasHLA Public

    R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.

    Genentech/midasHLA's past year of commit activity
    R 14 MIT 8 11 11 Updated Oct 8, 2026
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