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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. distributions distributions Public

    Python 7 11

  2. docs docs Public archive

    Python 21 58

Repositories

Showing 10 of 80 repositories
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs's past year of commit activity
    Makefile 2 5 5 0 Updated Oct 22, 2026
  • moving-pictures-tutorial Public

    Moving Pictures Tutorial source

    qiime2/moving-pictures-tutorial's past year of commit activity
    Makefile 0 3 0 0 Updated Oct 22, 2026
  • gut-to-soil-tutorial Public

    The gut-to-soil axis microbiome analysis tutorial

    qiime2/gut-to-soil-tutorial's past year of commit activity
    Makefile 1 7 3 0 Updated Oct 22, 2026
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library's past year of commit activity
    Svelte 0 BSD-3-Clause 4 3 2 Updated Oct 22, 2026
  • distributions Public
    qiime2/distributions's past year of commit activity
    Python 7 BSD-3-Clause 11 5 0 Updated Oct 22, 2026
  • qiime2/action-library-packaging's past year of commit activity
    Python 0 BSD-3-Clause 5 0 0 Updated Oct 21, 2026
  • homepage Public

    QIIME 2 Homepage

    qiime2/homepage's past year of commit activity
    Astro 0 MIT 1 0 2 Updated Oct 21, 2026
  • q2-demux Public
    qiime2/q2-demux's past year of commit activity
    Python 1 BSD-3-Clause 20 9 (3 issues need help) 1 Updated Oct 21, 2026
  • q2-boots Public

    q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

    qiime2/q2-boots's past year of commit activity
    Python 3 BSD-3-Clause 9 11 3 Updated Oct 21, 2026
  • q2-vizard Public

    The first choice of wizard lizards for interactive, generalized microbiome data visualization!

    qiime2/q2-vizard's past year of commit activity
    Python 1 BSD-3-Clause 14 15 0 Updated Oct 21, 2026