Issues

• 🗂 VCell-AI — AI discovery/analysis platform

  virtualcell/VCell-AI#71 · Filter by author jcschaff opened on Jul 7, 2026
  3

• Browser native confirm() dialog used for delete confirmation on Knowledge Base page

  virtualcell/VCell-AI#48 · Filter by author androemeda opened on Mar 8, 2026

• Bug: Local LLMs that don't support tool calling cause backend crash (e.g., deepseek-r1)

  virtualcell/VCell-AI#45 · Filter by author androemeda opened on Mar 8, 2026
  3

• Bug: Local LLM setup fails — missing env loading and vector dimension mismatch

  virtualcell/VCell-AI#43 · Filter by author androemeda opened on Mar 7, 2026
  3

• Improve LLM publication formatting for cleaner UI rendering

  virtualcell/VCell-AI#40 · Filter by author M-V-RAGHUPATHI-SAI opened on Mar 5, 2026

• fix: correct FrapBindings typo in chat supplemental action query

  virtualcell/VCell-AI#38 · Filter by author kushvinth opened on Mar 4, 2026
  1

• docs: fix incorrect repository folder references in README

  virtualcell/VCell-AI#35 · Filter by author M-V-RAGHUPATHI-SAI opened on Mar 4, 2026

• Onboarding modal Previous/Next buttons hidden on 13-inch displays

  virtualcell/VCell-AI#34 · Filter by author kushvinth opened on Mar 4, 2026
  2

• add Copy button to AI responses

  virtualcell/VCell-AI#31 · Filter by author M-V-RAGHUPATHI-SAI opened on Mar 4, 2026

• [FEATURE] MigratingThe Entire CI From Pottery to UV

  virtualcell/VCell-AI#30 · Filter by author kushvinth opened on Feb 26, 2026
  1

• docs: Fix incorrect directory path in Quick Start and update environment/dependency info

  virtualcell/VCell-AI#29 · Filter by author Drishti160803 opened on Jan 29, 2026

• Provide links to BioModels when retrieving publications

  enhancement
  Feature

  virtualcell/VCell-AI#28 · Filter by author vcellmike opened on Sep 4, 2025
  1

  

• Search in publications

  bug
  Bug

  virtualcell/VCell-AI#27 · Filter by author vcellmike opened on Sep 4, 2025
  1

  

• Publications group of questions

  enhancement
  Feature

  virtualcell/VCell-AI#26 · Filter by author vcellmike opened on Sep 4, 2025
  2

  

• Typo in "How to model FrapBindings in VCell Software?"

  bug
  Bug

  virtualcell/VCell-AI#25 · Filter by author vcellmike opened on Sep 4, 2025
  

• Triple title AI Assistant

  bug
  Bug

  virtualcell/VCell-AI#24 · Filter by author vcellmike opened on Sep 4, 2025
  

• Invisible AI analysis link

  bug
  Bug

  virtualcell/VCell-AI#23 · Filter by author vcellmike opened on Sep 4, 2025
  

• Inconsistent hyperlinks in response to model search

  bug
  Bug

  virtualcell/VCell-AI#22 · Filter by author vcellmike opened on Sep 4, 2025
  

• Use modelbricks-webapp visualization to depict species, molecules, reactions and observables

  enhancement
  virtualcell/VCell-AI#21 · Filter by author vcellmike opened on Aug 25, 2025
  

• Adding VCML from publications to the knowledgebase

  enhancement
  virtualcell/VCell-AI#20 · Filter by author vcellmike opened on Aug 25, 2025
  

• Links to files used in knowledgebase

  enhancement
  virtualcell/VCell-AI#16 · Filter by author vcellmike opened on Aug 21, 2025
  

• Improved Search

  virtualcell/VCell-AI#5 · Filter by author Ezequiel-Valencia opened on Aug 12, 2025

• Auth0

  virtualcell/VCell-AI#4 · Filter by author Ezequiel-Valencia opened on Aug 12, 2025
  

• Deploy to Serve System with K8

  virtualcell/VCell-AI#3 · Filter by author Ezequiel-Valencia opened on Aug 12, 2025